##fileformat=VCFv4.1 ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[../final/T_hg19_1000g.bam] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=[org.broadinstitute.sting.commandline.IntervalBinding@dcb52ae] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/mnt/scratch/Genomes/hg19_1000g/whole_genome.fa rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false disable_experimental_low_memory_sharding=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=BOTH p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_SITES standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) assume_single_sample_reads=null min_base_quality_score=17 max_deletion_fraction=0.05 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///mnt/scratch/Genomes/hg19_1000g/whole_genome.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT DenisovaPinky 19 60001 . G . . . DP=1;HaplotypeScore=0.0000;MQ=0.00;MQ0=1 GT:A:C:G:T:IR ./.:0,0:0,0:1,0:0,0:0 19 60002 . A . . . DP=2;HaplotypeScore=0.0000;MQ=0.00;MQ0=2 GT:A:C:G:T:IR ./.:1,1:0,0:0,0:0,0:0 19 60003 . T . . . DP=2;HaplotypeScore=0.0000;MQ=0.00;MQ0=2 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:1,1:0 19 60004 . C . . . DP=4;HaplotypeScore=0.0000;MQ=0.00;MQ0=4 GT:A:C:G:T:IR ./.:0,0:2,2:0,0:0,0:0 19 60005 . A . . . DP=4;HaplotypeScore=0.0000;MQ=0.00;MQ0=4 GT:A:C:G:T:IR ./.:2,2:0,0:0,0:0,0:0 19 60006 . C . . . DP=4;HaplotypeScore=0.0000;MQ=0.00;MQ0=4 GT:A:C:G:T:IR ./.:0,0:2,2:0,0:0,0:0 19 60007 . A . . . DP=5;HaplotypeScore=0.0000;MQ=0.00;MQ0=5 GT:A:C:G:T:IR ./.:2,3:0,0:0,0:0,0:0 19 60008 . G . . . DP=5;HaplotypeScore=0.0000;MQ=0.00;MQ0=5 GT:A:C:G:T:IR ./.:0,0:0,0:2,3:0,0:0 19 60009 . A . . . DP=6;HaplotypeScore=0.0000;MQ=0.00;MQ0=6 GT:A:C:G:T:IR ./.:2,4:0,0:0,0:0,0:0 19 60010 . G . . . DP=8;HaplotypeScore=0.0000;MQ=0.00;MQ0=8 GT:A:C:G:T:IR ./.:0,0:0,0:2,6:0,0:0 19 60011 . G . . . DP=9;HaplotypeScore=0.0000;MQ=0.00;MQ0=9 GT:A:C:G:T:IR ./.:0,0:0,0:3,6:0,0:0 19 60012 . C . . . DP=9;HaplotypeScore=0.0000;MQ=0.00;MQ0=9 GT:A:C:G:T:IR ./.:0,0:3,6:0,0:0,0:0 19 60013 . T . . . DP=9;HaplotypeScore=0.0000;MQ=0.00;MQ0=9 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:3,6:0 19 60014 . G . . . DP=9;HaplotypeScore=0.0000;MQ=0.00;MQ0=9 GT:A:C:G:T:IR ./.:0,0:0,0:3,6:0,0:0 19 60015 . G . . . DP=10;HaplotypeScore=0.0000;MQ=0.00;MQ0=10 GT:A:C:G:T:IR ./.:0,0:0,0:3,7:0,0:0 19 60016 . G . . . DP=10;HaplotypeScore=0.0000;MQ=0.00;MQ0=10 GT:A:C:G:T:IR ./.:0,0:0,0:3,7:0,0:0 19 60017 . C . . . DP=10;HaplotypeScore=0.0000;MQ=0.00;MQ0=10 GT:A:C:G:T:IR ./.:0,0:3,7:0,0:0,0:0 19 60018 . T . . . DP=10;HaplotypeScore=0.0000;MQ=0.00;MQ0=10 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:3,7:0 19 60019 . G . . . DP=11;HaplotypeScore=0.0000;MQ=0.00;MQ0=11 GT:A:C:G:T:IR ./.:0,0:0,0:3,7:0,1:0 19 60020 . C . . . DP=12;HaplotypeScore=0.0000;MQ=0.00;MQ0=12 GT:A:C:G:T:IR ./.:0,0:4,8:0,0:0,0:0 19 60021 . T . . . DP=12;HaplotypeScore=0.0000;MQ=0.00;MQ0=12 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:4,8:0 19 60022 . C . . . DP=12;HaplotypeScore=0.0000;MQ=0.00;MQ0=12 GT:A:C:G:T:IR ./.:0,0:4,8:0,0:0,0:0 19 60023 . C . . . DP=12;HaplotypeScore=0.0000;MQ=0.00;MQ0=12 GT:A:C:G:T:IR ./.:0,0:4,8:0,0:0,0:0 19 60024 . C . . . DP=12;HaplotypeScore=0.0000;MQ=0.00;MQ0=12 GT:A:C:G:T:IR ./.:0,0:4,8:0,0:0,0:0 19 60025 . C . . . DP=12;HaplotypeScore=0.0000;MQ=0.00;MQ0=12 GT:A:C:G:T:IR ./.:0,0:4,8:0,0:0,0:0 19 60026 . A . . . DP=12;HaplotypeScore=0.0000;MQ=0.00;MQ0=12 GT:A:C:G:T:IR ./.:4,8:0,0:0,0:0,0:0 19 60027 . C . . . DP=13;HaplotypeScore=0.0000;MQ=0.00;MQ0=13 GT:A:C:G:T:IR ./.:0,0:4,9:0,0:0,0:0 19 60028 . C . . . DP=13;HaplotypeScore=0.0000;MQ=0.00;MQ0=13 GT:A:C:G:T:IR ./.:0,0:4,9:0,0:0,0:0 19 60029 . C . . . DP=14;HaplotypeScore=0.0000;MQ=0.00;MQ0=14 GT:A:C:G:T:IR ./.:0,0:5,9:0,0:0,0:0 19 60030 . T . . . DP=15;HaplotypeScore=0.0000;MQ=0.00;MQ0=15 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:6,9:0 19 60031 . C . . . DP=15;HaplotypeScore=0.0000;MQ=0.00;MQ0=15 GT:A:C:G:T:IR ./.:0,1:6,8:0,0:0,0:0 19 60032 . T . . . DP=16;HaplotypeScore=0.0000;MQ=0.00;MQ0=16 GT:A:C:G:T:IR ./.:0,1:0,0:0,0:7,8:0 19 60033 . G . . . DP=17;HaplotypeScore=0.0000;MQ=0.00;MQ0=17 GT:A:C:G:T:IR ./.:0,0:0,0:8,9:0,0:0 19 60034 . C . . . DP=18;HaplotypeScore=0.0000;MQ=0.00;MQ0=18 GT:A:C:G:T:IR ./.:0,0:8,10:0,0:0,0:0 19 60035 . A . . . DP=19;HaplotypeScore=0.0000;MQ=0.00;MQ0=19 GT:A:C:G:T:IR ./.:8,11:0,0:0,0:0,0:0 19 60036 . C . . . DP=19;HaplotypeScore=0.0000;MQ=0.00;MQ0=19 GT:A:C:G:T:IR ./.:0,0:8,11:0,0:0,0:0 19 60037 . A . . . DP=19;HaplotypeScore=0.0000;MQ=0.00;MQ0=19 GT:A:C:G:T:IR ./.:8,11:0,0:0,0:0,0:0 19 60038 . C . . . DP=19;HaplotypeScore=0.0000;MQ=0.00;MQ0=19 GT:A:C:G:T:IR ./.:0,0:8,11:0,0:0,0:0 19 60039 . C . . . DP=28;HaplotypeScore=0.0000;MQ=0.00;MQ0=28 GT:A:C:G:T:IR ./.:0,0:8,20:0,0:0,0:0 19 60040 . T . . . DP=28;HaplotypeScore=0.0000;MQ=0.00;MQ0=28 GT:A:C:G:T:IR ./.:0,1:0,0:1,0:7,19:0 19 60041 . C . . . DP=29;HaplotypeScore=0.0000;MQ=0.00;MQ0=29 GT:A:C:G:T:IR ./.:0,0:8,21:0,0:0,0:0 19 60042 . C . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:7,23:0,0:0,0:0 19 60043 . T . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:7,23:0 19 60044 . G . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:0,1:7,22:0,0:0 19 60045 . C . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:7,22:0,1:0,0:0 19 60046 . T . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:7,23:0 19 60047 . T . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:7,23:0 19 60048 . C . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:7,23:0,0:0,0:0 19 60049 . T . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:7,23:0 19 60050 . A . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:7,23:0,0:0,0:0,0:0 19 60051 . A . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:7,23:0,0:0,0:0,0:0 19 60052 . C . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:6,23:0,0:1,0:0 19 60053 . A . . . DP=31;HaplotypeScore=0.0000;MQ=0.00;MQ0=31 GT:A:C:G:T:IR ./.:7,24:0,0:0,0:0,0:0 19 60054 . G . . . DP=31;HaplotypeScore=0.0000;MQ=0.00;MQ0=31 GT:A:C:G:T:IR ./.:0,0:0,0:7,24:0,0:0 19 60055 . C . . . DP=33;HaplotypeScore=0.0000;MQ=0.00;MQ0=33 GT:A:C:G:T:IR ./.:0,0:7,26:0,0:0,0:0 19 60056 . A . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:8,27:0,0:0,0:0,0:0 19 60057 . G . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:0,0:0,0:7,28:0,0:0 19 60058 . A . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:7,28:0,0:0,0:0,0:0 19 60059 . G . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:0,0:0,0:7,28:0,0:0 19 60060 . C . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:8,29:0,0:0,0:0 19 60061 . T . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:8,29:0 19 60062 . G . . . DP=38;HaplotypeScore=0.0000;MQ=0.00;MQ0=38 GT:A:C:G:T:IR ./.:0,0:0,0:8,30:0,0:0 19 60063 . C . . . DP=38;HaplotypeScore=0.0000;MQ=0.00;MQ0=38 GT:A:C:G:T:IR ./.:0,0:8,30:0,0:0,0:0 19 60064 . C . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:8,29:0,0:0,0:0 19 60065 . A . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:8,28:0,1:0,0:0,0:0 19 60066 . G . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:0,0:0,0:8,28:0,0:0 19 60067 . G . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:1,1:0,0:7,27:0,0:0 19 60068 . C . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:0,0:8,28:0,0:0,0:0 19 60069 . C . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:0,0:8,28:0,0:0,0:0 19 60070 . A . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:7,28:0,0:0,0:0,0:0 19 60071 . G . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:0,0:0,0:6,30:0,0:0 19 60072 . G . . . DP=38;HaplotypeScore=0.0000;MQ=0.00;MQ0=38 GT:A:C:G:T:IR ./.:0,0:0,0:6,31:1,0:0 19 60073 . C . . . DP=38;HaplotypeScore=0.0000;MQ=0.00;MQ0=38 GT:A:C:G:T:IR ./.:0,0:7,31:0,0:0,0:0 19 60074 . C . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:6,31:0,0:0,0:0 19 60075 . C . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:0,0:6,29:0,0:0,0:0 19 60076 . T . . . DP=34;HaplotypeScore=0.0000;MQ=0.00;MQ0=34 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:6,28:0 19 60077 . C . . . DP=34;HaplotypeScore=0.0000;MQ=0.00;MQ0=34 GT:A:C:G:T:IR ./.:0,0:6,28:0,0:0,0:0 19 60078 . A . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:7,28:0,0:0,0:0,0:0 19 60079 . G . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:0,0:0,0:6,29:0,0:0 19 60080 . G . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:0,0:0,0:6,29:0,0:0 19 60081 . C . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:0,0:5,29:1,0:0,0:0 19 60082 . A . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:6,29:0,0:0,0:0,0:0 19 60083 . A . . . DP=34;HaplotypeScore=0.0000;MQ=0.00;MQ0=34 GT:A:C:G:T:IR ./.:6,28:0,0:0,0:0,0:0 19 60084 . G . . . DP=34;HaplotypeScore=0.0000;MQ=0.00;MQ0=34 GT:A:C:G:T:IR ./.:0,0:0,0:6,28:0,0:0 19 60085 . G . . . DP=33;HaplotypeScore=0.0000;MQ=0.00;MQ0=33 GT:A:C:G:T:IR ./.:0,0:0,0:6,26:0,1:0 19 60086 . G . . . DP=33;HaplotypeScore=0.0000;MQ=0.00;MQ0=33 GT:A:C:G:T:IR ./.:0,0:0,0:6,27:0,0:0 19 60087 . C . . . DP=34;HaplotypeScore=0.0000;MQ=0.00;MQ0=34 GT:A:C:G:T:IR ./.:0,0:7,27:0,0:0,0:0 19 60088 . T . . . DP=33;HaplotypeScore=0.0000;MQ=0.00;MQ0=33 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:7,26:0 19 60089 . C . . . DP=34;HaplotypeScore=0.0000;MQ=0.00;MQ0=34 GT:A:C:G:T:IR ./.:0,0:8,26:0,0:0,0:0 19 60090 . T . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:8,27:0 19 60091 . G . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:0,0:0,0:8,28:0,0:0 19 60092 . A . . . DP=38;HaplotypeScore=0.0000;MQ=0.00;MQ0=38 GT:A:C:G:T:IR ./.:9,29:0,0:0,0:0,0:0 19 60093 . A . . . DP=39;HaplotypeScore=0.0000;MQ=0.00;MQ0=39 GT:A:C:G:T:IR ./.:9,30:0,0:0,0:0,0:0 19 60094 . G . . . DP=40;HaplotypeScore=0.0000;MQ=0.00;MQ0=40 GT:A:C:G:T:IR ./.:0,0:0,0:9,31:0,0:0 19 60095 . T . . . DP=40;HaplotypeScore=0.0000;MQ=0.00;MQ0=40 GT:A:C:G:T:IR ./.:0,0:0,0:1,1:8,30:0 19 60096 . C . . . DP=40;HaplotypeScore=0.0000;MQ=0.00;MQ0=40 GT:A:C:G:T:IR ./.:0,0:9,31:0,0:0,0:0 19 60097 . A . . . DP=40;HaplotypeScore=0.0000;MQ=0.00;MQ0=40 GT:A:C:G:T:IR ./.:9,31:0,0:0,0:0,0:0 19 60098 . G . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:0,0:8,29:0,0:0 19 60099 . G . . . DP=39;HaplotypeScore=0.0000;MQ=0.00;MQ0=39 GT:A:C:G:T:IR ./.:0,0:0,0:8,31:0,0:0 19 60100 . G . . . DP=40;HaplotypeScore=0.0000;MQ=0.00;MQ0=40 GT:A:C:G:T:IR ./.:0,0:0,0:9,31:0,0:0 19 60101 . T . . . DP=42;HaplotypeScore=0.0000;MQ=0.00;MQ0=42 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:9,33:0 19 60102 . C . . . DP=43;HaplotypeScore=0.0000;MQ=0.00;MQ0=43 GT:A:C:G:T:IR ./.:0,0:10,33:0,0:0,0:0 19 60103 . A . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:11,34:0,0:0,0:0,0:0 19 60104 . C . . . DP=44;HaplotypeScore=0.0000;MQ=0.00;MQ0=44 GT:A:C:G:T:IR ./.:1,0:10,33:0,0:0,0:0 19 60105 . C . . . DP=44;HaplotypeScore=0.0000;MQ=0.00;MQ0=44 GT:A:C:G:T:IR ./.:0,0:11,33:0,0:0,0:0 19 60106 . T . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:11,34:0 19 60107 . A . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:10,34:0,0:0,0:1,0:0 19 60108 . C . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:0,1:11,33:0,0:0,0:0 19 60109 . T . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:11,34:0 19 60110 . T . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,1:0,0:0,0:11,34:0 19 60111 . G . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:0,0:12,34:0,0:0 19 60112 . C . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:12,37:0,0:0,0:0 19 60113 . C . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:13,34:0,0:0,0:0 19 60114 . A . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:13,34:0,0:0,0:0,0:0 19 60115 . G . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:0,0:12,34:0,0:0 19 60116 . G . . . DP=44;HaplotypeScore=0.0000;MQ=0.00;MQ0=44 GT:A:C:G:T:IR ./.:0,0:0,0:12,32:0,0:0 19 60117 . G . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:0,0:0,0:13,32:0,0:0 19 60118 . C . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:14,32:0,0:0,0:0 19 60119 . C . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46;CpG GT:A:C:G:T:IR ./.:0,0:14,32:0,0:0,0:0 19 60120 . G . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45;CpG GT:A:C:G:T:IR ./.:0,0:0,0:14,31:0,0:0 19 60121 . A . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:14,31:0,0:0,0:0,0:0 19 60122 . T . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:14,31:0 19 60123 . C . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:0,0:14,30:0,1:0,0:0 19 60124 . T . . . DP=44;HaplotypeScore=0.0000;MQ=0.00;MQ0=44 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:14,30:0 19 60125 . T . . . DP=44;HaplotypeScore=0.0000;MQ=0.00;MQ0=44 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:14,30:0 19 60126 . G . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:0,0:0,0:14,31:0,0:0 19 60127 . G . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,0:0,0:14,34:0,0:0 19 60128 . T . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:14,34:0 19 60129 . G . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,0:0,0:13,34:0,1:0 19 60130 . C . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:14,37:0,0:0,0:0 19 60131 . C . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:14,38:0,0:0,0:0 19 60132 . A . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:15,37:0,0:0,0:0,0:0 19 60133 . T . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,38:0 19 60134 . C . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:0,1:16,37:0,0:0,0:0 19 60135 . C . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:0,0:11,37:0,0:5,1:0 19 60136 . A . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:14,37:2,0:0,0:0,0:0 19 60137 . G . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:0,0:16,34:0,0:0 19 60138 . G . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:0,0:15,36:0,0:0 19 60139 . G . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:0,0:14,36:0,0:0 19 60140 . G . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:0,0:15,36:0,0:0 19 60141 . G . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,0:0,0:15,33:0,0:0 19 60142 . C . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:15,35:0,0:0,0:0 19 60143 . C . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:15,36:0,0:0,0:0 19 60144 . T . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,37:0 19 60145 . C . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,1:15,35:0,0:0,0:0 19 60146 . T . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:16,37:0 19 60147 . A . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:16,38:0,0:0,0:0,0:0 19 60148 . C . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:0,0:16,39:0,0:0,0:0 19 60149 . A . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:16,39:0,0:0,0:0,0:0 19 60150 . A . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:16,40:0,0:0,0:0,0:0 19 60151 . G . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:16,42:0,0:0 19 60152 . G . . . DP=59;HaplotypeScore=0.0000;MQ=0.00;MQ0=59 GT:A:C:G:T:IR ./.:0,0:0,0:16,43:0,0:0 19 60153 . A . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:17,43:0,0:0,0:0,0:0 19 60154 . T . . . DP=59;HaplotypeScore=0.0000;MQ=0.00;MQ0=59 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:16,43:0 19 60155 . A . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:15,44:0,0:0,0:1,0:0 19 60156 . A . . . DP=59;HaplotypeScore=0.0000;MQ=0.00;MQ0=59 GT:A:C:G:T:IR ./.:16,43:0,0:0,0:0,0:0 19 60157 . T . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:16,42:0 19 60158 . C . . . DP=59;HaplotypeScore=0.0000;MQ=0.00;MQ0=59 GT:A:C:G:T:IR ./.:0,0:17,42:0,0:0,0:0 19 60159 . T . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:17,43:0 19 60160 . G . . . DP=59;HaplotypeScore=0.0000;MQ=0.00;MQ0=59 GT:A:C:G:T:IR ./.:0,0:0,0:17,42:0,0:0 19 60161 . A . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:17,41:0,0:0,0:0,0:0 19 60162 . C . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:17,40:0,0:0,0:0 19 60163 . C . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:16,41:0,0:0,0:0 19 60164 . T . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:16,40:0 19 60165 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:15,41:1,0:0 19 60166 . C . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:0,0:15,41:0,0:0,0:0 19 60167 . A . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:15,41:0,0:0,0:0,0:0 19 60168 . G . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:0,0:0,0:14,40:0,0:0 19 60169 . G . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:0,0:0,0:13,42:0,1:0 19 60170 . G . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:1,0:0,0:11,41:0,0:0 19 60171 . T . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:12,43:0 19 60172 . C . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54;CpG GT:A:C:G:T:IR ./.:0,0:12,42:0,0:0,0:0 19 60173 . G . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56;CpG GT:A:C:G:T:IR ./.:1,1:0,0:10,44:0,0:0 19 60174 . A . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:11,44:0,0:0,0:0,0:0 19 60175 . G . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:1,0:0,0:10,47:0,0:0 19 60176 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:10,47:0,0:0 19 60177 . A . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:10,47:0,0:0,0:0,0:0 19 60178 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:10,47:0,0:0 19 60179 . T . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:10,48:0 19 60180 . T . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:10,48:0 19 60181 . G . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:0,0:0,0:10,44:0,0:0 19 60182 . A . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:10,44:0,0:0,0:0,0:0 19 60183 . C . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49;CpG GT:A:C:G:T:IR ./.:0,0:8,40:0,0:1,0:0 19 60184 . G . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48;CpG GT:A:C:G:T:IR ./.:0,0:0,0:9,39:0,0:0 19 60185 . G . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:0,0:9,38:0,0:0 19 60186 . T . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,0:1,0:0,0:8,39:0 19 60187 . G . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:0,0:9,41:0,0:0 19 60188 . C . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:8,41:0,0:0,0:0 19 60189 . T . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:9,41:0 19 60190 . G . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:0,0:9,41:0,0:0 19 60191 . A . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:9,42:0,0:0,0:0,0:0 19 60192 . G . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:0,0:0,0:9,44:0,0:0 19 60193 . T . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:9,44:0 19 60194 . T . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:9,44:0 19 60195 . C . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:0,0:10,44:0,0:0,0:0 19 60196 . C . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:0,0:10,44:0,0:0,0:0 19 60197 . C . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:10,42:0,0:0,0:0 19 60198 . T . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:10,40:0 19 60199 . G . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:0,0:10,39:0,0:0 19 60200 . C . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,1:10,40:0,0:0,0:0 19 60201 . A . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:10,40:0,0:0,0:0,0:0 19 60202 . C . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:10,40:0,0:0,0:0 19 60203 . T . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:10,42:0 19 60204 . C . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:10,41:0,0:0,0:0 19 60205 . T . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:10,42:0 19 60206 . C . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:0,0:10,43:0,0:0,0:0 19 60207 . A . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:10,44:0,0:0,0:0,0:0 19 60208 . G . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:0,0:0,0:10,44:0,0:0 19 60209 . T . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:10,45:0 19 60210 . A . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:10,43:0,0:0,0:0,0:0 19 60211 . G . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:0,0:10,41:0,0:0 19 60212 . G . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:1,0:8,42:0,0:0 19 60213 . G . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:0,0:9,41:0,0:0 19 60214 . A . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:9,41:0,0:0,0:0,0:0 19 60215 . C . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:9,41:0,0:0,0:0 19 60216 . A . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:9,40:0,0:0,0:0,0:0 19 60217 . G . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:0,0:7,42:1,0:0 19 60218 . G . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:0,0:8,43:0,0:0 19 60219 . C . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:9,43:0,0:0,0:0 19 60220 . C . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:8,42:0,0:1,0:0 19 60221 . C . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:9,42:0,0:0,0:0 19 60222 . T . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:10,42:0 19 60223 . A . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:10,41:0,0:0,0:0,0:0 19 60224 . T . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:10,41:0 19 60225 . G . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:0,0:10,41:0,0:0 19 60226 . C . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:0,0:10,43:0,0:0,0:0 19 60227 . T . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:10,44:0 19 60228 . G . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:0,0:0,0:9,43:1,0:0 19 60229 . C . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:0,0:10,43:0,0:1,0:0 19 60230 . C . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:11,41:0,0:0,0:0 19 60231 . A . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:11,40:0,0:0,0:0,0:0 19 60232 . C . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:12,40:0,0:0,0:0 19 60233 . C . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:0,0:14,42:0,0:0,0:0 19 60234 . T . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:14,44:0 19 60235 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:13,44:0,0:0 19 60236 . T . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:13,42:1 19 60237 . A . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:12,43:0,0:1,0:0,0:0 19 60238 . C . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:15,43:0,0:0,0:0 19 60239 . A . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:15,45:0,0:0,0:0,0:0 19 60240 . T . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,45:0 19 60241 . G . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:0,0:16,50:0,0:0 19 60242 . C . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:0,0:16,51:0,0:0,0:0 19 60243 . T . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,52:0 19 60244 . A . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:15,51:0,0:0,0:0,0:0 19 60245 . T . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:16,54:0 19 60246 . C . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:16,55:0,0:0,0:0 19 60247 . T . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:16,55:0 19 60248 . G . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,0:16,54:0,0:0 19 60249 . A . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:17,55:0,0:0,0:0,0:0 19 60250 . A . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:17,54:0,0:0,0:0,0:0 19 60251 . G . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:3,2:0,0:14,52:0,0:0 19 60252 . G . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:0,0:17,50:0,1:0 19 60253 . A . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:17,52:0,0:0,0:0,0:0 19 60254 . C . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:17,52:0,0:0,0:0 19 60255 . A . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:18,53:0,0:0,0:0,0:0 19 60256 . G . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,0:18,52:0,0:0 19 60257 . C . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:1,0:18,53:0,0:0,0:0 19 60258 . C . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:19,52:0,0:0,0:0 19 60259 . T . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:21,51:0 19 60260 . C . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:21,51:0,0:0,0:0 19 60261 . C . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:20,50:0,0:1,0:0 19 60262 . A . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:21,50:0,0:0,0:0,0:0 19 60263 . G . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:0,0:21,48:0,0:0 19 60264 . G . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:0,0:20,48:0,1:0 19 60265 . G . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:0,0:20,48:0,0:0 19 60266 . C . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:20,46:0,0:0,0:0 19 60267 . A . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:20,46:0,0:0,0:0,0:0 19 60268 . C . . . DP=64;HaplotypeScore=0.0000;MQ=0.00;MQ0=64 GT:A:C:G:T:IR ./.:0,0:20,44:0,0:0,0:0 19 60269 . A . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:20,47:0,0:0,0:0,0:0 19 60270 . C . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:0,0:19,47:0,0:1,0:0 19 60271 . A . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:20,52:0,0:0,0:0,0:0 19 60272 . G . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,0:18,51:1,0:0 19 60273 . A . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:19,52:0,0:0,0:0,0:0 19 60274 . G . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:0,0:19,52:0,0:0 19 60275 . G . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,1:0,0:19,51:0,0:0 19 60276 . A . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:19,50:0,0:0,0:0,0:0 19 60277 . T . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:20,49:0 19 60278 . G . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,0:22,48:0,0:0 19 60279 . G . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:0,0:23,48:1,0:0 19 60280 . T . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:26,48:0 19 60281 . A . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:26,48:0,0:0,0:0,0:0 19 60282 . T . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:27,48:0 19 60283 . T . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:28,48:0 19 60284 . T . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:28,46:0 19 60285 . A . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:28,46:0,0:0,0:0,0:0 19 60286 . C . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:0,0:28,46:0,0:0,0:0 19 60287 . A . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:28,47:0,0:0,0:0,0:0 19 60288 . C . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:28,47:0,0:0,0:0 19 60289 . A . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:27,49:0,0:0,0:0,0:0 19 60290 . T . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:29,49:0 19 60291 . G . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:0,0:0,0:29,49:0,0:0 19 60292 . C . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:0,0:30,48:0,0:0,0:0 19 60293 . A . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:31,48:0,0:0,0:0,0:0 19 60294 . C . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:30,45:0,0:0,0:0 19 60295 . A . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:30,46:0,0:0,0:0,0:0 19 60296 . C . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,0:31,46:0,0:0,0:0 19 60297 . A . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:31,46:0,0:0,0:0,0:0 19 60298 . T . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:31,45:0 19 60299 . G . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,0:0,0:31,46:0,0:0 19 60300 . G . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,0:0,0:31,46:0,0:0 19 60301 . C . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:0,0:30,46:0,0:0,0:0 19 60302 . T . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:30,47:0 19 60303 . A . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:30,46:0,0:0,0:0,0:0 19 60304 . C . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:31,44:0,0:0,0:0 19 60305 . T . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:1,2:0,0:0,0:31,42:0 19 60306 . G . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:0,0:31,44:0,0:0 19 60307 . A . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:30,43:0,0:0,0:0,0:0 19 60308 . T . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:30,45:0 19 60309 . G . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:1,0:0,0:29,42:1,2:0 19 60310 . G . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:0,0:0,0:32,44:0,0:0 19 60311 . G . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:0,0:32,43:0,0:0 19 60312 . G . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:0,0:32,43:0,0:0 19 60313 . C . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:32,43:0,0:0,0:0 19 60314 . A . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:34,44:0,0:0,0:0,0:0 19 60315 . A . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:34,43:0,0:0,0:0,0:0 19 60316 . G . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:1,0:0,0:34,43:0,0:0 19 60317 . C . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,1:34,42:0,0:0,0:0 19 60318 . A . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:34,41:0,0:0,0:0,0:0 19 60319 . C . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:0,0:29,40:0,0:6,1:0 19 60320 . T . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:37,41:0 19 60321 . T . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:38,41:0 19 60322 . C . . . DP=81;HaplotypeScore=0.0000;MQ=0.00;MQ0=81 GT:A:C:G:T:IR ./.:0,0:39,42:0,0:0,0:0 19 60323 . A . . . DP=84;HaplotypeScore=0.0000;MQ=0.00;MQ0=84 GT:A:C:G:T:IR ./.:41,43:0,0:0,0:0,0:0 19 60324 . C . . . DP=84;HaplotypeScore=0.0000;MQ=0.00;MQ0=84 GT:A:C:G:T:IR ./.:0,0:41,43:0,0:0,0:0 19 60325 . A . . . DP=81;HaplotypeScore=0.0000;MQ=0.00;MQ0=81 GT:A:C:G:T:IR ./.:40,41:0,0:0,0:0,0:0 19 60326 . A . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:39,37:0,0:0,0:0,0:0 19 60327 . C . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:36,35:0,0:1,0:0 19 60328 . C . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:36,35:0,0:0,0:0 19 60329 . C . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:36,33:0,0:0,0:0 19 60330 . C . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:37,33:0,0:0,0:0 19 60331 . T . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:37,33:0 19 60332 . C . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:33,32:0,0:6,1:1 19 60333 . A . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:40,35:0,0:0,0:0,0:0 19 60334 . T . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:41,35:0 19 60335 . G . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:0,0:0,0:41,32:0,1:0 19 60336 . A . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:41,33:0,0:0,0:0,0:0 19 60337 . T . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:41,32:0 19 60338 . C . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:41,31:0,0:0,0:0 19 60339 . A . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:39,31:0,0:0,0:0,0:0 19 60340 . C . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69;CpG GT:A:C:G:T:IR ./.:0,0:38,30:0,0:1,0:0 19 60341 . G . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69;CpG GT:A:C:G:T:IR ./.:1,3:0,0:38,27:0,0:0 19 60342 . T . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:0,0:1,0:38,30:0 19 60343 . G . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,0:38,32:0,0:0 19 60344 . C . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:38,31:0,0:0,0:0 19 60345 . A . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:38,30:0,0:0,0:0,0:0 19 60346 . G . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:0,0:36,30:0,0:0 19 60347 . C . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:35,31:0,0:0,0:1 19 60348 . A . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:34,32:0,0:0,0:0,0:0 19 60349 . G . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:0,0:32,32:0,0:0 19 60350 . A . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:34,33:0,0:0,0:0,0:0 19 60351 . C . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:33,32:0,0:0,0:0 19 60352 . A . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:33,33:0,0:0,0:0,0:0 19 60353 . A . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:32,33:0,0:0,0:0,0:0 19 60354 . T . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:3,2:0,0:0,0:29,33:0 19 60355 . G . . . DP=63;HaplotypeScore=0.0000;MQ=0.00;MQ0=63 GT:A:C:G:T:IR ./.:0,0:0,0:31,32:0,0:0 19 60356 . T . . . DP=63;HaplotypeScore=0.0000;MQ=0.00;MQ0=63 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:31,32:1 19 60357 . G . . . DP=63;HaplotypeScore=0.0000;MQ=0.00;MQ0=63 GT:A:C:G:T:IR ./.:0,0:0,0:30,32:0,0:0 19 60358 . G . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:0,0:32,32:0,1:0 19 60359 . C . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:31,33:0,0:1,0:0 19 60360 . C . . . DP=62;HaplotypeScore=0.0000;MQ=0.00;MQ0=62 GT:A:C:G:T:IR ./.:0,0:30,32:0,0:0,0:0 19 60361 . T . . . DP=62;HaplotypeScore=0.0000;MQ=0.00;MQ0=62 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:30,32:0 19 60362 . C . . . DP=61;HaplotypeScore=0.0000;MQ=0.00;MQ0=61 GT:A:C:G:T:IR ./.:0,0:29,32:0,0:0,0:0 19 60363 . T . . . DP=62;HaplotypeScore=0.0000;MQ=0.00;MQ0=62 GT:A:C:G:T:IR ./.:0,0:1,0:1,0:28,32:0 19 60364 . G . . . DP=62;HaplotypeScore=0.0000;MQ=0.00;MQ0=62 GT:A:C:G:T:IR ./.:0,0:0,0:29,32:1,0:0 19 60365 . C . . . DP=62;HaplotypeScore=0.0000;MQ=0.00;MQ0=62 GT:A:C:G:T:IR ./.:0,0:29,33:0,0:0,0:0 19 60366 . A . . . DP=61;HaplotypeScore=0.0000;MQ=0.00;MQ0=61 GT:A:C:G:T:IR ./.:28,33:0,0:0,0:0,0:0 19 60367 . G . . . DP=59;HaplotypeScore=0.0000;MQ=0.00;MQ0=59 GT:A:C:G:T:IR ./.:0,0:0,0:26,33:0,0:0 19 60368 . A . . . DP=59;HaplotypeScore=0.0000;MQ=0.00;MQ0=59 GT:A:C:G:T:IR ./.:25,33:0,0:1,0:0,0:0 19 60369 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:24,33:0,0:0 19 60370 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:25,32:0,0:0 19 60371 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:25,32:0,0:0 19 60372 . G . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:0,0:0,0:26,30:0,0:0 19 60373 . G . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:0,0:0,0:24,30:0,0:0 19 60374 . A . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:22,30:0,0:0,0:1,0:1 19 60375 . A . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:21,30:0,0:0,0:0,0:0 19 60376 . C . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51;CpG GT:A:C:G:T:IR ./.:0,0:19,31:0,0:1,0:0 19 60377 . G . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52;CpG GT:A:C:G:T:IR ./.:0,0:0,0:20,32:0,0:0 19 60378 . G . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:0,0:20,32:0,0:0 19 60379 . A . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54 GT:A:C:G:T:IR ./.:20,34:0,0:0,0:0,0:0 19 60380 . G . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:0,0:0,0:20,33:0,0:0 19 60381 . A . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:20,32:0,0:0,0:0,0:0 19 60382 . C . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:0,0:20,33:0,0:0,0:0 19 60383 . C . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55;CpG GT:A:C:G:T:IR ./.:0,0:17,34:0,0:4,0:0 19 60384 . G . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55;CpG GT:A:C:G:T:IR ./.:0,0:0,0:21,34:0,0:0 19 60385 . G . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:0,0:0,0:21,35:0,0:0 19 60386 . A . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:21,36:0,0:0,0:0,0:0 19 60387 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:21,36:0,0:0 19 60388 . G . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:21,37:0,0:0 19 60389 . C . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:20,37:0,0:0,0:0 19 60390 . T . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:20,37:0 19 60391 . G . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:0,0:0,0:19,36:0,0:0 19 60392 . A . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:19,36:0,0:0,0:0,0:0 19 60393 . G . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:0,0:0,0:19,36:0,0:0 19 60394 . A . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:19,34:0,0:0,0:0,0:0 19 60395 . C . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:16,33:0,0:0,0:0 19 60396 . T . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:16,32:0 19 60397 . G . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:0,0:16,31:0,0:0 19 60398 . G . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,0:0,0:17,31:0,0:0 19 60399 . C . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:17,30:0,0:0,0:0 19 60400 . A . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:17,30:0,0:0,0:0,0:0 19 60401 . A . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:15,30:0,0:0,0:0,0:0 19 60402 . G . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:0,0:16,33:0,0:0 19 60403 . G . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,0:0,0:16,32:0,0:0 19 60404 . C . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,1:16,31:0,0:0,0:0 19 60405 . T . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,34:0 19 60406 . G . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:0,0:15,34:0,0:0 19 60407 . G . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:0,0:15,31:0,0:0 19 60408 . A . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:15,31:0,0:0,0:0,0:0 19 60409 . C . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:15,31:0,0:0,0:0 19 60410 . C . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:13,33:0,0:0,0:0 19 60411 . T . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:13,34:0 19 60412 . G . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:0,0:12,35:0,0:0 19 60413 . A . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:12,37:0,0:0,0:0,0:0 19 60414 . G . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:0,0:11,38:0,0:0 19 60415 . T . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:11,38:0 19 60416 . G . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:0,0:8,38:0,0:0 19 60417 . T . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:10,41:0 19 60418 . C . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52;CpG GT:A:C:G:T:IR ./.:0,0:10,42:0,0:0,0:0 19 60419 . G . . . DP=54;HaplotypeScore=0.0000;MQ=0.00;MQ0=54;CpG GT:A:C:G:T:IR ./.:2,0:0,0:9,43:0,0:0 19 60420 . T . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:11,44:0 19 60421 . C . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:12,45:0,0:0,0:0 19 60422 . A . . . DP=62;HaplotypeScore=0.0000;MQ=0.00;MQ0=62 GT:A:C:G:T:IR ./.:14,48:0,0:0,0:0,0:0 19 60423 . C . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:0,0:13,47:0,0:0,0:0 19 60424 . C . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:0,0:13,47:0,0:0,0:0 19 60425 . T . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:13,47:0 19 60426 . A . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:13,47:0,0:0,0:0,0:0 19 60427 . A . . . DP=63;HaplotypeScore=0.0000;MQ=0.00;MQ0=63 GT:A:C:G:T:IR ./.:15,48:0,0:0,0:0,0:0 19 60428 . A . . . DP=63;HaplotypeScore=0.0000;MQ=0.00;MQ0=63 GT:A:C:G:T:IR ./.:15,48:0,0:0,0:0,0:0 19 60429 . T . . . DP=63;HaplotypeScore=0.0000;MQ=0.00;MQ0=63 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,48:0 19 60430 . T . . . DP=64;HaplotypeScore=0.0000;MQ=0.00;MQ0=64 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:16,48:0 19 60431 . C . . . DP=63;HaplotypeScore=0.0000;MQ=0.00;MQ0=63 GT:A:C:G:T:IR ./.:0,0:16,47:0,0:0,0:0 19 60432 . A . . . DP=64;HaplotypeScore=0.0000;MQ=0.00;MQ0=64 GT:A:C:G:T:IR ./.:16,48:0,0:0,0:0,0:0 19 60433 . G . . . DP=61;HaplotypeScore=0.0000;MQ=0.00;MQ0=61 GT:A:C:G:T:IR ./.:0,1:0,0:16,44:0,0:0 19 60434 . A . . . DP=59;HaplotypeScore=0.0000;MQ=0.00;MQ0=59 GT:A:C:G:T:IR ./.:14,45:0,0:0,0:0,0:0 19 60435 . C . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58;CpG GT:A:C:G:T:IR ./.:0,0:11,41:0,0:3,3:0 19 60436 . G . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58;CpG GT:A:C:G:T:IR ./.:0,0:0,0:14,44:0,0:0 19 60437 . G . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:13,44:1,0:0 19 60438 . G . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:14,44:0,0:0 19 60439 . G . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:14,44:0,0:0 19 60440 . A . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:14,43:0,0:0,0:0,0:0 19 60441 . A . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:14,43:0,0:0,0:0,0:0 19 60442 . C . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:15,42:0,0:0,0:0 19 60443 . T . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,43:0 19 60444 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:15,42:0,0:0 19 60445 . C . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:17,41:0,0:0,0:0 19 60446 . C . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:17,41:0,0:0,0:0 19 60447 . C . . . DP=59;HaplotypeScore=0.0000;MQ=0.00;MQ0=59 GT:A:C:G:T:IR ./.:0,0:18,41:0,0:0,0:0 19 60448 . C . . . DP=64;HaplotypeScore=0.0000;MQ=0.00;MQ0=64 GT:A:C:G:T:IR ./.:0,0:19,44:0,0:1,0:0 19 60449 . T . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:20,45:0 19 60450 . G . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:0,0:23,46:0,0:0 19 60451 . C . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:24,46:0,0:0,0:0 19 60452 . A . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:27,45:0,0:0,1:0,0:0 19 60453 . C . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:1,0:26,44:0,0:0,0:0 19 60454 . A . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:19,39:8,7:0,0:0,0:0 19 60455 . T . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:28,46:0 19 60456 . A . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:28,49:0,0:0,0:0,0:0 19 60457 . G . . . DP=82;HaplotypeScore=0.0000;MQ=0.00;MQ0=82 GT:A:C:G:T:IR ./.:0,0:0,0:30,52:0,0:0 19 60458 . T . . . DP=83;HaplotypeScore=0.0000;MQ=0.00;MQ0=83 GT:A:C:G:T:IR ./.:0,0:0,3:0,0:31,49:0 19 60459 . G . . . DP=81;HaplotypeScore=0.0000;MQ=0.00;MQ0=81 GT:A:C:G:T:IR ./.:0,0:0,3:31,47:0,0:0 19 60460 . A . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80 GT:A:C:G:T:IR ./.:31,49:0,0:0,0:0,0:0 19 60461 . A . . . DP=82;HaplotypeScore=0.0000;MQ=0.00;MQ0=82 GT:A:C:G:T:IR ./.:32,50:0,0:0,0:0,0:0 19 60462 . C . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80;CpG GT:A:C:G:T:IR ./.:0,0:32,48:0,0:0,0:0 19 60463 . G . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80;CpG GT:A:C:G:T:IR ./.:0,1:0,0:33,46:0,0:0 19 60464 . G . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80 GT:A:C:G:T:IR ./.:0,0:0,0:33,47:0,0:0 19 60465 . C . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80 GT:A:C:G:T:IR ./.:0,0:34,46:0,0:0,0:0 19 60466 . T . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:34,46:0 19 60467 . C . . . DP=81;HaplotypeScore=0.0000;MQ=0.00;MQ0=81 GT:A:C:G:T:IR ./.:0,0:35,46:0,0:0,0:0 19 60468 . A . . . DP=81;HaplotypeScore=0.0000;MQ=0.00;MQ0=81 GT:A:C:G:T:IR ./.:35,46:0,0:0,0:0,0:0 19 60469 . C . . . DP=81;HaplotypeScore=0.0000;MQ=0.00;MQ0=81 GT:A:C:G:T:IR ./.:0,0:35,46:0,0:0,0:0 19 60470 . T . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:34,46:0 19 60471 . G . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80 GT:A:C:G:T:IR ./.:0,0:0,0:34,46:0,0:0 19 60472 . A . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:34,44:0,0:0,0:0,0:0 19 60473 . G . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:0,0:1,0:33,44:0,0:0 19 60474 . C . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:0,0:34,44:0,0:0,0:0 19 60475 . A . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:34,44:0,0:0,1:0,0:0 19 60476 . A . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:34,44:0,1:0,0:0,0:0 19 60477 . A . . . DP=81;HaplotypeScore=0.0000;MQ=0.00;MQ0=81 GT:A:C:G:T:IR ./.:34,47:0,0:0,0:0,0:6 19 60478 . C . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80 GT:A:C:G:T:IR ./.:0,1:32,41:0,0:0,0:0 19 60479 . C . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80 GT:A:C:G:T:IR ./.:0,1:31,41:0,0:1,0:0 19 60480 . C . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:0,0:33,45:0,0:1,0:0 19 60481 . C . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80;CpG GT:A:C:G:T:IR ./.:0,0:34,46:0,0:0,0:0 19 60482 . G . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79;CpG GT:A:C:G:T:IR ./.:0,0:0,0:33,45:0,1:0 19 60483 . A . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:33,46:0,0:0,0:0,0:0 19 60484 . G . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:0,0:0,0:33,46:0,0:0 19 60485 . T . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:33,46:0 19 60486 . C . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:1,0:32,46:0,0:0,0:0 19 60487 . C . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:0,0:33,46:0,0:0,0:0 19 60488 . C . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80;CpG GT:A:C:G:T:IR ./.:0,0:32,46:0,0:2,0:0 19 60489 . G . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78;CpG GT:A:C:G:T:IR ./.:1,0:0,0:34,43:0,0:0 19 60490 . A . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:34,43:0,0:0,0:0,0:0 19 60491 . C . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:0,0:33,41:0,0:0,0:0 19 60492 . C . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:0,0:32,41:0,0:0,0:0 19 60493 . A . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:32,40:0,0:0,0:0,0:0 19 60494 . C . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:28,40:0,0:0,0:0 19 60495 . C . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68;CpG GT:A:C:G:T:IR ./.:0,0:25,40:0,0:3,0:0 19 60496 . G . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65;CpG GT:A:C:G:T:IR ./.:0,0:0,0:27,38:0,0:0 19 60497 . C . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:0,0:27,39:0,0:0,1:0 19 60498 . C . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:27,41:0,0:0,0:0 19 60499 . T . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:27,43:0 19 60500 . C . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:25,43:0,0:0,0:0 19 60501 . A . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:24,42:0,0:0,0:0,0:0 19 60502 . G . . . DP=62;HaplotypeScore=0.0000;MQ=0.00;MQ0=62 GT:A:C:G:T:IR ./.:0,0:0,0:22,40:0,0:0 19 60503 . T . . . DP=63;HaplotypeScore=0.0000;MQ=0.00;MQ0=63 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:22,41:0 19 60504 . G . . . DP=62;HaplotypeScore=0.0000;MQ=0.00;MQ0=62 GT:A:C:G:T:IR ./.:0,0:0,0:21,41:0,0:0 19 60505 . T . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:0,0:0,0:0,1:20,39:0 19 60506 . G . . . DP=59;HaplotypeScore=0.0000;MQ=0.00;MQ0=59 GT:A:C:G:T:IR ./.:0,0:0,0:20,39:0,0:0 19 60507 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:19,38:0,0:0 19 60508 . T . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:19,38:0 19 60509 . C . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:0,0:18,38:0,0:0,0:0 19 60510 . T . . . DP=55;HaplotypeScore=0.0000;MQ=0.00;MQ0=55 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:17,38:0 19 60511 . A . . . DP=53;HaplotypeScore=0.0000;MQ=0.00;MQ0=53 GT:A:C:G:T:IR ./.:17,36:0,0:0,0:0,0:0 19 60512 . G . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:0,0:17,33:0,0:0 19 60513 . C . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:17,34:0,0:0,0:0 19 60514 . T . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:17,34:0 19 60515 . C . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:16,34:0,0:0,0:0 19 60516 . C . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,0:15,33:0,0:0,0:0 19 60517 . T . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,32:0 19 60518 . C . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:0,0:15,30:0,0:0,0:0 19 60519 . A . . . DP=45;HaplotypeScore=0.0000;MQ=0.00;MQ0=45 GT:A:C:G:T:IR ./.:15,30:0,0:0,0:0,0:0 19 60520 . C . . . DP=44;HaplotypeScore=0.0000;MQ=0.00;MQ0=44 GT:A:C:G:T:IR ./.:0,0:15,29:0,0:0,0:0 19 60521 . C . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:14,32:0,0:0,0:0 19 60522 . T . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,32:0 19 60523 . G . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:0,0:15,31:0,0:0 19 60524 . C . . . DP=48;HaplotypeScore=0.0000;MQ=0.00;MQ0=48 GT:A:C:G:T:IR ./.:0,0:16,32:0,0:0,0:0 19 60525 . T . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,31:0 19 60526 . T . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,32:0 19 60527 . C . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:14,32:0,0:0,0:0 19 60528 . C . . . DP=44;HaplotypeScore=0.0000;MQ=0.00;MQ0=44 GT:A:C:G:T:IR ./.:0,0:14,30:0,0:0,0:0 19 60529 . A . . . DP=43;HaplotypeScore=0.0000;MQ=0.00;MQ0=43 GT:A:C:G:T:IR ./.:15,28:0,0:0,0:0,0:0 19 60530 . T . . . DP=43;HaplotypeScore=0.0000;MQ=0.00;MQ0=43 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,28:0 19 60531 . C . . . DP=43;HaplotypeScore=0.0000;MQ=0.00;MQ0=43 GT:A:C:G:T:IR ./.:0,0:15,28:0,0:0,0:0 19 60532 . C . . . DP=40;HaplotypeScore=0.0000;MQ=0.00;MQ0=40 GT:A:C:G:T:IR ./.:0,0:12,28:0,0:0,0:0 19 60533 . T . . . DP=38;HaplotypeScore=0.0000;MQ=0.00;MQ0=38 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:12,26:0 19 60534 . C . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:0,0:12,24:0,0:0,0:0 19 60535 . C . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:0,0:12,23:0,0:0,0:0 19 60536 . C . . . DP=32;HaplotypeScore=0.0000;MQ=0.00;MQ0=32 GT:A:C:G:T:IR ./.:0,0:11,20:1,0:0,0:0 19 60537 . T . . . DP=34;HaplotypeScore=0.0000;MQ=0.00;MQ0=34 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:13,21:0 19 60538 . G . . . DP=33;HaplotypeScore=0.0000;MQ=0.00;MQ0=33 GT:A:C:G:T:IR ./.:0,0:0,0:13,20:0,0:0 19 60539 . G . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:0,0:12,18:0,0:0 19 60540 . T . . . DP=28;HaplotypeScore=0.0000;MQ=0.00;MQ0=28 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:11,17:0 19 60541 . G . . . DP=28;HaplotypeScore=0.0000;MQ=0.00;MQ0=28 GT:A:C:G:T:IR ./.:0,0:0,0:12,16:0,0:0 19 60542 . C . . . DP=27;HaplotypeScore=0.0000;MQ=0.00;MQ0=27;CpG GT:A:C:G:T:IR ./.:0,0:10,15:0,0:1,1:0 19 60543 . G . . . DP=27;HaplotypeScore=0.0000;MQ=0.00;MQ0=27;CpG GT:A:C:G:T:IR ./.:0,0:0,0:12,15:0,0:0 19 60544 . G . . . DP=27;HaplotypeScore=0.0000;MQ=0.00;MQ0=27 GT:A:C:G:T:IR ./.:0,0:0,0:12,15:0,0:0 19 60545 . G . . . DP=29;HaplotypeScore=0.0000;MQ=0.00;MQ0=29 GT:A:C:G:T:IR ./.:0,0:0,0:13,16:0,0:0 19 60546 . G . . . DP=28;HaplotypeScore=0.0000;MQ=0.00;MQ0=28 GT:A:C:G:T:IR ./.:0,0:0,0:11,15:2,0:0 19 60547 . T . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:13,17:0 19 60548 . G . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:0,0:13,17:0,0:0 19 60549 . G . . . DP=31;HaplotypeScore=0.0000;MQ=0.00;MQ0=31 GT:A:C:G:T:IR ./.:0,0:0,0:13,18:0,0:0 19 60550 . G . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:0,0:12,18:0,0:0 19 60551 . C . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:12,18:0,0:0,0:0 19 60552 . C . . . DP=31;HaplotypeScore=0.0000;MQ=0.00;MQ0=31 GT:A:C:G:T:IR ./.:0,0:12,19:0,0:0,0:0 19 60553 . C . . . DP=33;HaplotypeScore=0.0000;MQ=0.00;MQ0=33 GT:A:C:G:T:IR ./.:0,0:13,20:0,0:0,0:0 19 60554 . A . . . DP=33;HaplotypeScore=0.0000;MQ=0.00;MQ0=33 GT:A:C:G:T:IR ./.:13,20:0,0:0,0:0,0:0 19 60555 . G . . . DP=32;HaplotypeScore=0.0000;MQ=0.00;MQ0=32 GT:A:C:G:T:IR ./.:0,0:0,0:12,20:0,0:0 19 60556 . T . . . DP=34;HaplotypeScore=0.0000;MQ=0.00;MQ0=34 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:13,21:0 19 60557 . G . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:0,0:0,0:14,21:0,0:0 19 60558 . A . . . DP=35;HaplotypeScore=0.0000;MQ=0.00;MQ0=35 GT:A:C:G:T:IR ./.:14,21:0,0:0,0:0,0:0 19 60559 . T . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:14,22:0 19 60560 . A . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:15,21:0,0:0,0:0,0:0 19 60561 . T . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,21:0 19 60562 . C . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:15,22:0,0:0,0:0 19 60563 . A . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:13,22:0,0:2,0:0,0:0 19 60564 . G . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:0,0:15,22:0,0:0 19 60565 . C . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:15,22:0,0:0,0:0 19 60566 . T . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:15,21:0 19 60567 . G . . . DP=36;HaplotypeScore=0.0000;MQ=0.00;MQ0=36 GT:A:C:G:T:IR ./.:0,0:0,0:16,20:0,0:0 19 60568 . C . . . DP=38;HaplotypeScore=0.0000;MQ=0.00;MQ0=38 GT:A:C:G:T:IR ./.:0,0:17,21:0,0:0,0:0 19 60569 . C . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:16,21:0,0:0,0:0 19 60570 . T . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:16,21:0 19 60571 . G . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:0,0:16,21:0,0:0 19 60572 . C . . . DP=38;HaplotypeScore=0.0000;MQ=0.00;MQ0=38 GT:A:C:G:T:IR ./.:0,0:16,22:0,0:0,0:0 19 60573 . T . . . DP=40;HaplotypeScore=0.0000;MQ=0.00;MQ0=40 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:17,23:0 19 60574 . G . . . DP=41;HaplotypeScore=0.0000;MQ=0.00;MQ0=41 GT:A:C:G:T:IR ./.:0,0:0,0:18,23:0,0:0 19 60575 . T . . . DP=42;HaplotypeScore=0.0000;MQ=0.00;MQ0=42 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:18,24:0 19 60576 . T . . . DP=42;HaplotypeScore=0.0000;MQ=0.00;MQ0=42 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:18,24:0 19 60577 . C . . . DP=42;HaplotypeScore=0.0000;MQ=0.00;MQ0=42 GT:A:C:G:T:IR ./.:0,0:19,23:0,0:0,0:0 19 60578 . C . . . DP=41;HaplotypeScore=0.0000;MQ=0.00;MQ0=41 GT:A:C:G:T:IR ./.:0,0:19,21:0,0:0,1:0 19 60579 . C . . . DP=42;HaplotypeScore=0.0000;MQ=0.00;MQ0=42 GT:A:C:G:T:IR ./.:0,0:19,23:0,0:0,0:0 19 60580 . C . . . DP=43;HaplotypeScore=0.0000;MQ=0.00;MQ0=43 GT:A:C:G:T:IR ./.:0,0:19,24:0,0:0,0:0 19 60581 . A . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:18,28:0,0:0,0:0,0:0 19 60582 . G . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:0,0:18,28:0,0:0 19 60583 . A . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:18,28:0,0:0,0:0,0:0 19 60584 . T . . . DP=46;HaplotypeScore=0.0000;MQ=0.00;MQ0=46 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:18,28:0 19 60585 . G . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:0,0:20,29:0,0:0 19 60586 . T . . . DP=50;HaplotypeScore=0.0000;MQ=0.00;MQ0=50 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:21,29:0 19 60587 . G . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:0,0:21,28:0,0:0 19 60588 . C . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:24,27:0,1:0,0:0 19 60589 . C . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:0,0:26,30:0,0:0,0:0 19 60590 . A . . . DP=56;HaplotypeScore=0.0000;MQ=0.00;MQ0=56 GT:A:C:G:T:IR ./.:25,31:0,0:0,0:0,0:0 19 60591 . A . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:26,31:0,0:0,0:0,0:0 19 60592 . G . . . DP=60;HaplotypeScore=0.0000;MQ=0.00;MQ0=60 GT:A:C:G:T:IR ./.:0,0:0,0:26,34:0,0:0 19 60593 . T . . . DP=61;HaplotypeScore=0.0000;MQ=0.00;MQ0=61 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:26,35:0 19 60594 . G . . . DP=61;HaplotypeScore=0.0000;MQ=0.00;MQ0=61 GT:A:C:G:T:IR ./.:0,0:0,0:26,35:0,0:0 19 60595 . C . . . DP=64;HaplotypeScore=0.0000;MQ=0.00;MQ0=64 GT:A:C:G:T:IR ./.:0,0:28,36:0,0:0,0:0 19 60596 . A . . . DP=64;HaplotypeScore=0.0000;MQ=0.00;MQ0=64 GT:A:C:G:T:IR ./.:28,36:0,0:0,0:0,0:0 19 60597 . T . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:28,37:0 19 60598 . T . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:28,38:0 19 60599 . C . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:28,38:0,0:0,0:0 19 60600 . T . . . DP=63;HaplotypeScore=0.0000;MQ=0.00;MQ0=63 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:28,35:0 19 60601 . T . . . DP=64;HaplotypeScore=0.0000;MQ=0.00;MQ0=64 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:28,36:0 19 60602 . G . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:0,0:27,38:0,0:0 19 60603 . T . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:27,39:0 19 60604 . G . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:0,0:27,39:0,0:1 19 60605 . T . . . DP=64;HaplotypeScore=0.0000;MQ=0.00;MQ0=64 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:27,37:0 19 60606 . G . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:0,0:28,37:0,0:0 19 60607 . C . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:1,0:27,37:0,0:0,0:0 19 60608 . T . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:29,37:0 19 60609 . T . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:30,38:0 19 60610 . G . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:0,0:31,40:0,0:0 19 60611 . C . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:31,41:0,0:0,0:0 19 60612 . A . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:27,42:0,0:3,0:0,0:0 19 60613 . T . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:30,43:0 19 60614 . C . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:30,45:0,0:0,0:0 19 60615 . T . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:31,46:0 19 60616 . C . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:0,0:30,47:1,0:0,0:0 19 60617 . A . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:29,48:0,0:0,0:0,0:0 19 60618 . T . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:29,48:0 19 60619 . G . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,0:0,0:29,48:0,0:0 19 60620 . G . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:0,0:0,0:29,49:0,0:0 19 60621 . A . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:29,45:0,0:0,0:0,0:0 19 60622 . A . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:29,45:0,0:0,0:0,0:0 19 60623 . C . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75;CpG GT:A:C:G:T:IR ./.:0,0:27,45:0,0:3,0:0 19 60624 . G . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75;CpG GT:A:C:G:T:IR ./.:0,0:0,0:30,45:0,0:0 19 60625 . C . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:30,45:0,0:0,0:0 19 60626 . C . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,0:30,47:0,0:0,0:0 19 60627 . A . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:30,47:0,0:0,0:0,0:0 19 60628 . T . . . DP=80;HaplotypeScore=0.0000;MQ=0.00;MQ0=80 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:31,49:0 19 60629 . T . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:30,49:0 19 60630 . T . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:29,48:0 19 60631 . C . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:0,0:28,47:0,0:0,0:0 19 60632 . C . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:0,0:28,48:0,0:0,0:0 19 60633 . C . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:1,0:27,49:0,0:0,0:0 19 60634 . C . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:1,0:27,50:0,0:0,0:0 19 60635 . A . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:29,50:0,0:0,0:0,0:0 19 60636 . G . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:0,0:0,0:27,51:0,0:0 19 60637 . A . . . DP=78;HaplotypeScore=0.0000;MQ=0.00;MQ0=78 GT:A:C:G:T:IR ./.:27,51:0,0:0,0:0,0:0 19 60638 . C . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:0,0:25,48:0,0:0,0:0 19 60639 . A . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:26,47:0,0:0,0:0,0:0 19 60640 . T . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:26,45:0 19 60641 . C . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:0,0:27,47:0,0:0,0:0 19 60642 . C . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:0,0:26,47:0,0:0,0:0 19 60643 . C . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:26,46:0,0:0,0:0 19 60644 . T . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:26,46:0 19 60645 . G . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:0,0:26,46:0,0:0 19 60646 . T . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:3,0:0,0:23,45:0 19 60647 . G . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:0,0:26,45:0,0:0 19 60648 . G . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:0,0:0,0:27,46:0,0:0 19 60649 . C . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:27,45:0,0:0,0:0 19 60650 . T . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:27,44:0 19 60651 . G . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,0:27,43:0,0:0 19 60652 . G . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:1,3:26,41:0,0:0 19 60653 . C . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:27,42:0,0:0,0:0 19 60654 . T . . . DP=71;HaplotypeScore=0.0000;MQ=0.00;MQ0=71 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:28,43:0 19 60655 . C . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:26,43:0,0:0,0:0 19 60656 . C . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:26,46:0,0:0,0:0 19 60657 . T . . . DP=72;HaplotypeScore=0.0000;MQ=0.00;MQ0=72 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:26,46:0 19 60658 . G . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:0,0:0,0:26,47:0,0:0 19 60659 . A . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:25,40:0,0:2,3:0,0:0 19 60660 . T . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:26,42:0 19 60661 . G . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:0,0:26,42:0,0:0 19 60662 . C . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:26,40:0,0:0,0:0 19 60663 . C . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:0,0:26,41:0,0:0,0:0 19 60664 . C . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68;CpG GT:A:C:G:T:IR ./.:0,0:26,41:0,0:0,1:0 19 60665 . G . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69;CpG GT:A:C:G:T:IR ./.:6,6:0,0:21,36:0,0:0 19 60666 . A . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:25,42:0,0:0,0:0,0:0 19 60667 . G . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:0,0:26,42:0,0:0 19 60668 . G . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:0,0:24,43:1,0:0 19 60669 . C . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:0,1:23,43:0,0:0,0:0 19 60670 . C . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:23,43:0,0:0,0:0 19 60671 . C . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:25,44:0,0:0,0:0 19 60672 . A . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:24,42:0,0:0,0:0,0:0 19 60673 . A . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:24,42:0,0:0,0:0,0:0 19 60674 . G . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,1:0,0:23,40:1,0:0 19 60675 . T . . . DP=64;HaplotypeScore=0.0000;MQ=0.00;MQ0=64 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:23,41:0 19 60676 . G . . . DP=63;HaplotypeScore=0.0000;MQ=0.00;MQ0=63 GT:A:C:G:T:IR ./.:0,0:0,0:23,40:0,0:0 19 60677 . T . . . DP=64;HaplotypeScore=0.0000;MQ=0.00;MQ0=64 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:23,41:0 19 60678 . C . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:23,42:0,0:0,0:0 19 60679 . T . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:25,43:0 19 60680 . G . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:0,0:0,0:25,42:0,0:0 19 60681 . A . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:24,41:0,0:0,0:0,0:0 19 60682 . T . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:24,41:0 19 60683 . G . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:0,0:0,0:26,41:0,0:0 19 60684 . C . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:0,1:26,40:0,0:0,0:0 19 60685 . T . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:26,41:0 19 60686 . T . . . DP=69;HaplotypeScore=0.0000;MQ=0.00;MQ0=69 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:27,42:0 19 60687 . T . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:28,45:0 19 60688 . A . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:28,46:0,0:0,0:0,0:0 19 60689 . A . . . DP=73;HaplotypeScore=0.0000;MQ=0.00;MQ0=73 GT:A:C:G:T:IR ./.:28,45:0,0:0,0:0,0:0 19 60690 . G . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:0,0:1,0:28,46:0,1:0 19 60691 . G . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:1,0:0,0:28,47:0,0:0 19 60692 . C . . . DP=75;HaplotypeScore=0.0000;MQ=0.00;MQ0=75 GT:A:C:G:T:IR ./.:1,0:28,46:0,0:0,0:0 19 60693 . A . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:28,46:0,0:0,0:0,0:0 19 60694 . C . . . DP=77;HaplotypeScore=0.0000;MQ=0.00;MQ0=77 GT:A:C:G:T:IR ./.:0,0:30,47:0,0:0,0:0 19 60695 . A . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:30,49:0,0:0,0:0,0:0 19 60696 . T . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:2,5:0,0:0,0:28,44:0 19 60697 . C . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:0,0:29,48:0,0:1,1:0 19 60698 . A . . . DP=81;HaplotypeScore=0.0000;MQ=0.00;MQ0=81 GT:A:C:G:T:IR ./.:25,46:0,0:5,5:0,0:0 19 60699 . C . . . DP=83;HaplotypeScore=0.0000;MQ=0.00;MQ0=83 GT:A:C:G:T:IR ./.:0,0:30,53:0,0:0,0:0 19 60700 . C . . . DP=88;HaplotypeScore=0.0000;MQ=0.00;MQ0=88 GT:A:C:G:T:IR ./.:0,0:32,56:0,0:0,0:0 19 60701 . C . . . DP=88;HaplotypeScore=0.0000;MQ=0.00;MQ0=88 GT:A:C:G:T:IR ./.:0,0:33,55:0,0:0,0:0 19 60702 . C . . . DP=87;HaplotypeScore=0.0000;MQ=0.00;MQ0=87 GT:A:C:G:T:IR ./.:0,0:32,55:0,0:0,0:0 19 60703 . A . . . DP=93;HaplotypeScore=0.0000;MQ=0.00;MQ0=93 GT:A:C:G:T:IR ./.:32,61:0,0:0,0:0,0:0 19 60704 . C . . . DP=94;HaplotypeScore=0.0000;MQ=0.00;MQ0=94 GT:A:C:G:T:IR ./.:0,0:32,62:0,0:0,0:0 19 60705 . T . . . DP=99;HaplotypeScore=0.0000;MQ=0.00;MQ0=99 GT:A:C:G:T:IR ./.:0,0:1,0:0,0:31,67:0 19 60706 . C . . . DP=98;HaplotypeScore=0.0000;MQ=0.00;MQ0=98 GT:A:C:G:T:IR ./.:0,0:32,66:0,0:0,0:0 19 60707 . A . . . DP=103;HaplotypeScore=0.0000;MQ=0.00;MQ0=103 GT:A:C:G:T:IR ./.:35,68:0,0:0,0:0,0:0 19 60708 . T . . . DP=104;HaplotypeScore=0.0000;MQ=0.00;MQ0=104 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:35,69:0 19 60709 . G . . . DP=107;HaplotypeScore=0.0000;MQ=0.00;MQ0=107 GT:A:C:G:T:IR ./.:0,0:0,0:36,71:0,0:0 19 60710 . C . . . DP=106;HaplotypeScore=0.0000;MQ=0.00;MQ0=106 GT:A:C:G:T:IR ./.:0,0:36,69:0,0:1,0:0 19 60711 . T . . . DP=106;HaplotypeScore=0.0000;MQ=0.00;MQ0=106 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:36,70:0 19 60712 . T . . . DP=108;HaplotypeScore=0.0000;MQ=0.00;MQ0=108 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:38,70:0 19 60713 . T . . . DP=109;HaplotypeScore=0.0000;MQ=0.00;MQ0=109 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:38,71:0 19 60714 . T . . . DP=107;HaplotypeScore=0.0000;MQ=0.00;MQ0=107 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:36,71:0 19 60715 . C . . . DP=108;HaplotypeScore=0.0000;MQ=0.00;MQ0=108 GT:A:C:G:T:IR ./.:0,0:36,72:0,0:0,0:0 19 60716 . C . . . DP=110;HaplotypeScore=0.0000;MQ=0.00;MQ0=110 GT:A:C:G:T:IR ./.:0,0:38,72:0,0:0,0:0 19 60717 . A . . . DP=104;HaplotypeScore=0.0000;MQ=0.00;MQ0=104 GT:A:C:G:T:IR ./.:35,69:0,0:0,0:0,0:0 19 60718 . T . . . DP=105;HaplotypeScore=0.0000;MQ=0.00;MQ0=105 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:35,70:0 19 60719 . G . . . DP=107;HaplotypeScore=0.0000;MQ=0.00;MQ0=107 GT:A:C:G:T:IR ./.:0,0:0,0:35,72:0,0:0 19 60720 . T . . . DP=107;HaplotypeScore=0.0000;MQ=0.00;MQ0=107 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:35,72:0 19 60721 . T . . . DP=108;HaplotypeScore=0.0000;MQ=0.00;MQ0=108 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:36,72:0 19 60722 . C . . . DP=107;HaplotypeScore=0.0000;MQ=0.00;MQ0=107 GT:A:C:G:T:IR ./.:0,0:38,69:0,0:0,0:0 19 60723 . T . . . DP=110;HaplotypeScore=0.0000;MQ=0.00;MQ0=110 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:39,71:0 19 60724 . T . . . DP=110;HaplotypeScore=0.0000;MQ=0.00;MQ0=110 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:39,71:0 19 60725 . T . . . DP=110;HaplotypeScore=0.0000;MQ=0.00;MQ0=110 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:39,71:0 19 60726 . G . . . DP=112;HaplotypeScore=0.0000;MQ=0.00;MQ0=112 GT:A:C:G:T:IR ./.:0,0:0,0:39,73:0,0:0 19 60727 . G . . . DP=113;HaplotypeScore=0.0000;MQ=0.00;MQ0=113 GT:A:C:G:T:IR ./.:0,0:0,0:38,74:1,0:0 19 60728 . C . . . DP=110;HaplotypeScore=0.0000;MQ=0.00;MQ0=110 GT:A:C:G:T:IR ./.:0,0:37,73:0,0:0,0:0 19 60729 . C . . . DP=111;HaplotypeScore=0.0000;MQ=0.00;MQ0=111;CpG GT:A:C:G:T:IR ./.:0,0:36,74:0,0:1,0:0 19 60730 . G . . . DP=111;HaplotypeScore=0.0000;MQ=0.00;MQ0=111;CpG GT:A:C:G:T:IR ./.:0,1:0,0:37,73:0,0:0 19 60731 . C . . . DP=111;HaplotypeScore=0.0000;MQ=0.00;MQ0=111 GT:A:C:G:T:IR ./.:0,0:36,74:0,0:1,0:0 19 60732 . A . . . DP=112;HaplotypeScore=0.0000;MQ=0.00;MQ0=112 GT:A:C:G:T:IR ./.:37,75:0,0:0,0:0,0:0 19 60733 . G . . . DP=114;HaplotypeScore=0.0000;MQ=0.00;MQ0=114 GT:A:C:G:T:IR ./.:0,0:0,0:38,75:1,0:0 19 60734 . C . . . DP=114;HaplotypeScore=0.0000;MQ=0.00;MQ0=114 GT:A:C:G:T:IR ./.:0,0:42,72:0,0:0,0:0 19 60735 . A . . . DP=109;HaplotypeScore=0.0000;MQ=0.00;MQ0=109 GT:A:C:G:T:IR ./.:40,69:0,0:0,0:0,0:0 19 60736 . A . . . DP=109;HaplotypeScore=0.0000;MQ=0.00;MQ0=109 GT:A:C:G:T:IR ./.:41,68:0,0:0,0:0,0:0 19 60737 . G . . . DP=112;HaplotypeScore=0.0000;MQ=0.00;MQ0=112 GT:A:C:G:T:IR ./.:0,0:0,0:42,70:0,0:0 19 60738 . G . . . DP=109;HaplotypeScore=0.0000;MQ=0.00;MQ0=109 GT:A:C:G:T:IR ./.:1,0:0,0:40,68:0,0:0 19 60739 . C . . . DP=110;HaplotypeScore=0.0000;MQ=0.00;MQ0=110 GT:A:C:G:T:IR ./.:0,0:42,68:0,0:0,0:0 19 60740 . C . . . DP=111;HaplotypeScore=0.0000;MQ=0.00;MQ0=111;CpG GT:A:C:G:T:IR ./.:0,0:42,68:0,0:0,1:0 19 60741 . G . . . DP=111;HaplotypeScore=0.0000;MQ=0.00;MQ0=111;CpG GT:A:C:G:T:IR ./.:0,1:0,0:42,68:0,0:0 19 60742 . C . . . DP=108;HaplotypeScore=0.0000;MQ=0.00;MQ0=108 GT:A:C:G:T:IR ./.:1,0:42,65:0,0:0,0:0 19 60743 . T . . . DP=108;HaplotypeScore=0.0000;MQ=0.00;MQ0=108 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:42,66:0 19 60744 . C . . . DP=107;HaplotypeScore=0.0000;MQ=0.00;MQ0=107 GT:A:C:G:T:IR ./.:0,0:43,64:0,0:0,0:0 19 60745 . T . . . DP=107;HaplotypeScore=0.0000;MQ=0.00;MQ0=107 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:43,64:0 19 60746 . C . . . DP=108;HaplotypeScore=0.0000;MQ=0.00;MQ0=108 GT:A:C:G:T:IR ./.:0,0:43,65:0,0:0,0:0 19 60747 . A . . . DP=108;HaplotypeScore=0.0000;MQ=0.00;MQ0=108 GT:A:C:G:T:IR ./.:43,65:0,0:0,0:0,0:0 19 60748 . C . . . DP=106;HaplotypeScore=0.0000;MQ=0.00;MQ0=106 GT:A:C:G:T:IR ./.:0,0:42,64:0,0:0,0:0 19 60749 . T . . . DP=106;HaplotypeScore=0.0000;MQ=0.00;MQ0=106 GT:A:C:G:T:IR ./.:0,1:0,0:0,0:42,63:0 19 60750 . G . . . DP=107;HaplotypeScore=0.0000;MQ=0.00;MQ0=107 GT:A:C:G:T:IR ./.:0,0:0,0:43,64:0,0:0 19 60751 . C . . . DP=108;HaplotypeScore=0.0000;MQ=0.00;MQ0=108 GT:A:C:G:T:IR ./.:0,0:17,58:27,5:0,1:0 19 60752 . A . . . DP=106;HaplotypeScore=0.0000;MQ=0.00;MQ0=106 GT:A:C:G:T:IR ./.:42,64:0,0:0,0:0,0:0 19 60753 . A . . . DP=104;HaplotypeScore=0.0000;MQ=0.00;MQ0=104 GT:A:C:G:T:IR ./.:41,63:0,0:0,0:0,0:0 19 60754 . A . . . DP=105;HaplotypeScore=0.0000;MQ=0.00;MQ0=105 GT:A:C:G:T:IR ./.:41,64:0,0:0,0:0,0:0 19 60755 . G . . . DP=104;HaplotypeScore=0.0000;MQ=0.00;MQ0=104 GT:A:C:G:T:IR ./.:0,0:0,0:41,63:0,0:0 19 60756 . T . . . DP=103;HaplotypeScore=0.0000;MQ=0.00;MQ0=103 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:41,62:0 19 60757 . T . . . DP=102;HaplotypeScore=0.0000;MQ=0.00;MQ0=102 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:41,61:0 19 60758 . A . . . DP=101;HaplotypeScore=0.0000;MQ=0.00;MQ0=101 GT:A:C:G:T:IR ./.:41,60:0,0:0,0:0,0:0 19 60759 . A . . . DP=100;HaplotypeScore=0.0000;MQ=0.00;MQ0=100 GT:A:C:G:T:IR ./.:41,59:0,0:0,0:0,0:0 19 60760 . C . . . DP=100;HaplotypeScore=0.0000;MQ=0.00;MQ0=100 GT:A:C:G:T:IR ./.:0,1:40,59:0,0:0,0:0 19 60761 . T . . . DP=100;HaplotypeScore=0.0000;MQ=0.00;MQ0=100 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:39,61:0 19 60762 . C . . . DP=101;HaplotypeScore=0.0000;MQ=0.00;MQ0=101 GT:A:C:G:T:IR ./.:1,0:39,61:0,0:0,0:0 19 60763 . T . . . DP=107;HaplotypeScore=0.0000;MQ=0.00;MQ0=107 GT:A:C:G:T:IR ./.:0,0:1,0:0,0:39,67:0 19 60764 . G . . . DP=105;HaplotypeScore=0.0000;MQ=0.00;MQ0=105 GT:A:C:G:T:IR ./.:0,0:0,0:40,65:0,0:0 19 60765 . A . . . DP=102;HaplotypeScore=0.0000;MQ=0.00;MQ0=102 GT:A:C:G:T:IR ./.:38,64:0,0:0,0:0,0:0 19 60766 . T . . . DP=102;HaplotypeScore=0.0000;MQ=0.00;MQ0=102 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:38,64:0 19 60767 . G . . . DP=102;HaplotypeScore=0.0000;MQ=0.00;MQ0=102 GT:A:C:G:T:IR ./.:0,0:0,0:38,63:0,1:0 19 60768 . C . . . DP=102;HaplotypeScore=0.0000;MQ=0.00;MQ0=102;CpG GT:A:C:G:T:IR ./.:0,0:38,64:0,0:0,0:0 19 60769 . G . . . DP=98;HaplotypeScore=0.0000;MQ=0.00;MQ0=98;CpG GT:A:C:G:T:IR ./.:0,1:0,0:34,63:0,0:0 19 60770 . T . . . DP=98;HaplotypeScore=0.0000;MQ=0.00;MQ0=98 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:34,64:0 19 60771 . G . . . DP=95;HaplotypeScore=0.0000;MQ=0.00;MQ0=95 GT:A:C:G:T:IR ./.:0,0:0,0:32,63:0,0:0 19 60772 . T . . . DP=96;HaplotypeScore=0.0000;MQ=0.00;MQ0=96 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:33,63:0 19 60773 . G . . . DP=96;HaplotypeScore=0.0000;MQ=0.00;MQ0=96 GT:A:C:G:T:IR ./.:0,0:0,0:32,64:0,0:0 19 60774 . T . . . DP=98;HaplotypeScore=0.0000;MQ=0.00;MQ0=98 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:33,65:0 19 60775 . A . . . DP=97;HaplotypeScore=0.0000;MQ=0.00;MQ0=97 GT:A:C:G:T:IR ./.:33,64:0,0:0,0:0,0:0 19 60776 . A . . . DP=97;HaplotypeScore=0.0000;MQ=0.00;MQ0=97 GT:A:C:G:T:IR ./.:33,64:0,0:0,0:0,0:0 19 60777 . C . . . DP=98;HaplotypeScore=0.0000;MQ=0.00;MQ0=98 GT:A:C:G:T:IR ./.:0,0:33,65:0,0:0,0:0 19 60778 . A . . . DP=102;HaplotypeScore=0.0000;MQ=0.00;MQ0=102 GT:A:C:G:T:IR ./.:34,68:0,0:0,0:0,0:0 19 60779 . C . . . DP=98;HaplotypeScore=0.0000;MQ=0.00;MQ0=98;CpG GT:A:C:G:T:IR ./.:0,0:30,67:0,0:1,0:0 19 60780 . G . . . DP=99;HaplotypeScore=0.0000;MQ=0.00;MQ0=99;CpG GT:A:C:G:T:IR ./.:0,0:0,0:32,67:0,0:0 19 60781 . A . . . DP=98;HaplotypeScore=0.0000;MQ=0.00;MQ0=98 GT:A:C:G:T:IR ./.:31,67:0,0:0,0:0,0:0 19 60782 . C . . . DP=96;HaplotypeScore=0.0000;MQ=0.00;MQ0=96 GT:A:C:G:T:IR ./.:0,0:29,67:0,0:0,0:0 19 60783 . A . . . DP=94;HaplotypeScore=0.0000;MQ=0.00;MQ0=94 GT:A:C:G:T:IR ./.:28,66:0,0:0,0:0,0:0 19 60784 . T . . . DP=90;HaplotypeScore=0.0000;MQ=0.00;MQ0=90 GT:A:C:G:T:IR ./.:0,1:0,0:0,0:27,62:0 19 60785 . C . . . DP=89;HaplotypeScore=0.0000;MQ=0.00;MQ0=89 GT:A:C:G:T:IR ./.:0,0:26,62:0,1:0,0:0 19 60786 . C . . . DP=86;HaplotypeScore=0.0000;MQ=0.00;MQ0=86 GT:A:C:G:T:IR ./.:0,0:24,61:0,0:0,1:0 19 60787 . T . . . DP=85;HaplotypeScore=0.0000;MQ=0.00;MQ0=85 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:24,61:0 19 60788 . C . . . DP=85;HaplotypeScore=0.0000;MQ=0.00;MQ0=85 GT:A:C:G:T:IR ./.:0,0:24,61:0,0:0,0:0 19 60789 . C . . . DP=84;HaplotypeScore=0.0000;MQ=0.00;MQ0=84 GT:A:C:G:T:IR ./.:0,0:24,60:0,0:0,0:0 19 60790 . T . . . DP=79;HaplotypeScore=0.0000;MQ=0.00;MQ0=79 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:22,57:0 19 60791 . C . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:0,0:21,55:0,0:0,0:0 19 60792 . C . . . DP=76;HaplotypeScore=0.0000;MQ=0.00;MQ0=76 GT:A:C:G:T:IR ./.:0,0:21,55:0,0:0,0:0 19 60793 . C . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:0,0:20,54:0,0:0,0:0 19 60794 . A . . . DP=74;HaplotypeScore=0.0000;MQ=0.00;MQ0=74 GT:A:C:G:T:IR ./.:20,54:0,0:0,0:0,0:0 19 60795 . G . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,1:20,49:0,0:0 19 60796 . T . . . DP=70;HaplotypeScore=0.0000;MQ=0.00;MQ0=70 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:19,51:0 19 60797 . C . . . DP=68;HaplotypeScore=0.0000;MQ=0.00;MQ0=68;CpG GT:A:C:G:T:IR ./.:0,0:19,49:0,0:0,0:0 19 60798 . G . . . DP=67;HaplotypeScore=0.0000;MQ=0.00;MQ0=67;CpG GT:A:C:G:T:IR ./.:1,0:0,0:18,48:0,0:3 19 60799 . C . . . DP=66;HaplotypeScore=0.0000;MQ=0.00;MQ0=66 GT:A:C:G:T:IR ./.:0,0:16,47:0,0:0,0:0 19 60800 . C . . . DP=65;HaplotypeScore=0.0000;MQ=0.00;MQ0=65 GT:A:C:G:T:IR ./.:0,0:19,46:0,0:0,0:0 19 60801 . C . . . DP=62;HaplotypeScore=0.0000;MQ=0.00;MQ0=62 GT:A:C:G:T:IR ./.:0,0:19,43:0,0:0,0:0 19 60802 . C . . . DP=61;HaplotypeScore=0.0000;MQ=0.00;MQ0=61 GT:A:C:G:T:IR ./.:0,0:14,43:0,0:4,0:0 19 60803 . T . . . DP=58;HaplotypeScore=0.0000;MQ=0.00;MQ0=58 GT:A:C:G:T:IR ./.:0,0:0,0:1,0:13,44:0 19 60804 . G . . . DP=57;HaplotypeScore=0.0000;MQ=0.00;MQ0=57 GT:A:C:G:T:IR ./.:0,0:0,0:14,43:0,0:0 19 60805 . T . . . DP=52;HaplotypeScore=0.0000;MQ=0.00;MQ0=52 GT:A:C:G:T:IR ./.:0,0:1,0:0,0:13,38:0 19 60806 . A . . . DP=51;HaplotypeScore=0.0000;MQ=0.00;MQ0=51 GT:A:C:G:T:IR ./.:14,37:0,0:0,0:0,0:0 19 60807 . G . . . DP=49;HaplotypeScore=0.0000;MQ=0.00;MQ0=49 GT:A:C:G:T:IR ./.:0,0:0,0:14,35:0,0:0 19 60808 . C . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:14,33:0,0:0,0:0 19 60809 . T . . . DP=47;HaplotypeScore=0.0000;MQ=0.00;MQ0=47 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:14,33:0 19 60810 . C . . . DP=44;HaplotypeScore=0.0000;MQ=0.00;MQ0=44 GT:A:C:G:T:IR ./.:0,0:14,30:0,0:0,0:0 19 60811 . C . . . DP=42;HaplotypeScore=0.0000;MQ=0.00;MQ0=42 GT:A:C:G:T:IR ./.:0,2:14,26:0,0:0,0:0 19 60812 . C . . . DP=41;HaplotypeScore=0.0000;MQ=0.00;MQ0=41 GT:A:C:G:T:IR ./.:0,0:14,27:0,0:0,0:0 19 60813 . C . . . DP=40;HaplotypeScore=0.0000;MQ=0.00;MQ0=40 GT:A:C:G:T:IR ./.:0,0:13,27:0,0:0,0:0 19 60814 . T . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:11,26:0 19 60815 . A . . . DP=37;HaplotypeScore=0.0000;MQ=0.00;MQ0=37 GT:A:C:G:T:IR ./.:10,26:1,0:0,0:0,0:0 19 60816 . C . . . DP=34;HaplotypeScore=0.0000;MQ=0.00;MQ0=34 GT:A:C:G:T:IR ./.:0,0:11,23:0,0:0,0:0 19 60817 . C . . . DP=33;HaplotypeScore=0.0000;MQ=0.00;MQ0=33 GT:A:C:G:T:IR ./.:0,0:11,22:0,0:0,0:0 19 60818 . T . . . DP=31;HaplotypeScore=0.0000;MQ=0.00;MQ0=31 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:11,20:0 19 60819 . C . . . DP=31;HaplotypeScore=0.0000;MQ=0.00;MQ0=31 GT:A:C:G:T:IR ./.:0,0:11,20:0,0:0,0:0 19 60820 . C . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:10,20:0,0:0,0:0 19 60821 . A . . . DP=29;HaplotypeScore=0.0000;MQ=0.00;MQ0=29 GT:A:C:G:T:IR ./.:10,19:0,0:0,0:0,0:0 19 60822 . A . . . DP=29;HaplotypeScore=0.0000;MQ=0.00;MQ0=29 GT:A:C:G:T:IR ./.:10,19:0,0:0,0:0,0:0 19 60823 . G . . . DP=28;HaplotypeScore=0.0000;MQ=0.00;MQ0=28 GT:A:C:G:T:IR ./.:0,0:0,0:10,18:0,0:0 19 60824 . A . . . DP=26;HaplotypeScore=0.0000;MQ=0.00;MQ0=26 GT:A:C:G:T:IR ./.:10,16:0,0:0,0:0,0:0 19 60825 . G . . . DP=26;HaplotypeScore=0.0000;MQ=0.00;MQ0=26 GT:A:C:G:T:IR ./.:0,0:0,0:10,16:0,0:0 19 60826 . C . . . DP=25;HaplotypeScore=0.0000;MQ=0.00;MQ0=25 GT:A:C:G:T:IR ./.:0,0:8,16:0,0:1,0:0 19 60827 . C . . . DP=23;HaplotypeScore=0.0000;MQ=0.00;MQ0=23 GT:A:C:G:T:IR ./.:0,0:8,15:0,0:0,0:0 19 60828 . C . . . DP=23;HaplotypeScore=0.0000;MQ=0.00;MQ0=23 GT:A:C:G:T:IR ./.:0,0:8,15:0,0:0,0:0 19 60829 . A . . . DP=21;HaplotypeScore=0.0000;MQ=0.00;MQ0=21 GT:A:C:G:T:IR ./.:7,14:0,0:0,0:0,0:0 19 60830 . G . . . DP=22;HaplotypeScore=0.0000;MQ=0.00;MQ0=22 GT:A:C:G:T:IR ./.:0,0:0,0:7,15:0,0:0 19 60831 . C . . . DP=21;HaplotypeScore=0.0000;MQ=0.00;MQ0=21 GT:A:C:G:T:IR ./.:0,2:6,13:0,0:0,0:0 19 60832 . C . . . DP=20;HaplotypeScore=0.0000;MQ=0.00;MQ0=20 GT:A:C:G:T:IR ./.:0,0:6,14:0,0:0,0:0 19 60833 . C . . . DP=18;HaplotypeScore=0.0000;MQ=0.00;MQ0=18 GT:A:C:G:T:IR ./.:0,0:6,12:0,0:0,0:0 19 60834 . T . . . DP=18;HaplotypeScore=0.0000;MQ=0.00;MQ0=18 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:6,12:0 19 60835 . T . . . DP=18;HaplotypeScore=0.0000;MQ=0.00;MQ0=18 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:6,12:0 19 60836 . G . . . DP=14;HaplotypeScore=0.0000;MQ=0.00;MQ0=14 GT:A:C:G:T:IR ./.:0,0:0,0:6,8:0,0:0 19 60837 . C . . . DP=14;HaplotypeScore=0.0000;MQ=0.00;MQ0=14 GT:A:C:G:T:IR ./.:1,0:5,8:0,0:0,0:0 19 60838 . C . . . DP=14;HaplotypeScore=0.0000;MQ=0.00;MQ0=14 GT:A:C:G:T:IR ./.:0,0:6,7:0,1:0,0:0 19 60839 . C . . . DP=13;HaplotypeScore=0.0000;MQ=0.00;MQ0=13 GT:A:C:G:T:IR ./.:0,0:6,7:0,0:0,0:0 19 60840 . A . . . DP=12;HaplotypeScore=0.0000;MQ=0.00;MQ0=12 GT:A:C:G:T:IR ./.:5,7:0,0:0,0:0,0:0 19 60841 . C . . . DP=11;HaplotypeScore=0.0000;MQ=0.00;MQ0=11 GT:A:C:G:T:IR ./.:0,0:5,6:0,0:0,0:0 19 60842 . A . . . DP=9;HaplotypeScore=0.0000;MQ=0.00;MQ0=9 GT:A:C:G:T:IR ./.:5,4:0,0:0,0:0,0:0 19 60843 . G . . . DP=9;HaplotypeScore=0.0000;MQ=0.00;MQ0=9 GT:A:C:G:T:IR ./.:0,0:0,0:5,4:0,0:0 19 60844 . G . . . DP=9;HaplotypeScore=0.0000;MQ=0.00;MQ0=9 GT:A:C:G:T:IR ./.:0,0:0,0:5,4:0,0:0 19 60845 . G . . . DP=8;HaplotypeScore=0.0000;MQ=0.00;MQ0=8 GT:A:C:G:T:IR ./.:0,0:0,0:5,3:0,0:0 19 60846 . C . . . DP=8;HaplotypeScore=0.0000;MQ=0.00;MQ0=8 GT:A:C:G:T:IR ./.:0,0:5,3:0,0:0,0:0 19 60847 . C . . . DP=7;HaplotypeScore=0.0000;MQ=0.00;MQ0=7 GT:A:C:G:T:IR ./.:0,0:5,2:0,0:0,0:0 19 60848 . A . . . DP=7;HaplotypeScore=0.0000;MQ=0.00;MQ0=7 GT:A:C:G:T:IR ./.:5,2:0,0:0,0:0,0:0 19 60849 . T . . . DP=6;HaplotypeScore=0.0000;MQ=0.00;MQ0=6 GT:A:C:G:T:IR ./.:0,0:4,0:0,1:1,0:0 19 60850 . A . . . DP=8;HaplotypeScore=0.0000;MQ=0.00;MQ0=8 GT:A:C:G:T:IR ./.:5,3:0,0:0,0:0,0:0 19 60851 . C . . . DP=9;HaplotypeScore=0.0000;MQ=0.00;MQ0=9 GT:A:C:G:T:IR ./.:0,0:6,3:0,0:0,0:0 19 60852 . T . . . DP=10;HaplotypeScore=0.0000;MQ=0.00;MQ0=10 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:7,3:0 19 60853 . C . . . DP=12;HaplotypeScore=0.0000;MQ=0.00;MQ0=12 GT:A:C:G:T:IR ./.:0,0:9,3:0,0:0,0:0 19 60854 . C . . . DP=13;HaplotypeScore=0.0000;MQ=0.00;MQ0=13 GT:A:C:G:T:IR ./.:0,0:9,4:0,0:0,0:0 19 60855 . A . . . DP=13;HaplotypeScore=0.0000;MQ=0.00;MQ0=13 GT:A:C:G:T:IR ./.:8,4:0,0:0,0:1,0:0 19 60856 . C . . . DP=13;HaplotypeScore=0.0000;MQ=0.00;MQ0=13;CpG GT:A:C:G:T:IR ./.:0,0:9,4:0,0:0,0:0 19 60857 . G . . . DP=15;HaplotypeScore=0.0000;MQ=0.00;MQ0=15;CpG GT:A:C:G:T:IR ./.:0,1:0,0:9,5:0,0:0 19 60858 . T . . . DP=17;HaplotypeScore=0.0000;MQ=0.00;MQ0=17 GT:A:C:G:T:IR ./.:0,0:0,0:0,0:9,8:0 19 60859 . G . . . DP=21;HaplotypeScore=0.0000;MQ=0.00;MQ0=21 GT:A:C:G:T:IR ./.:0,0:0,0:9,12:0,0:0 19 60860 . C . . . DP=24;HaplotypeScore=0.0000;MQ=0.00;MQ0=24 GT:A:C:G:T:IR ./.:0,0:12,12:0,0:0,0:0 19 60861 . A . . . DP=24;HaplotypeScore=0.0000;MQ=0.00;MQ0=24 GT:A:C:G:T:IR ./.:12,12:0,0:0,0:0,0:0 19 60862 . G . . . DP=25;HaplotypeScore=0.0000;MQ=0.00;MQ0=25 GT:A:C:G:T:IR ./.:0,0:0,0:13,12:0,0:0 19 60863 . A . . . DP=29;HaplotypeScore=0.0000;MQ=0.00;MQ0=29 GT:A:C:G:T:IR ./.:16,13:0,0:0,0:0,0:0 19 60864 . G . . . DP=31;HaplotypeScore=0.0000;MQ=0.00;MQ0=31 GT:A:C:G:T:IR ./.:0,0:0,0:17,14:0,0:0 19 60865 . C . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:15,15:0,0:0,0:0 19 60866 . A . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:15,15:0,0:0,0:0,0:0 19 60867 . G . . . DP=30;HaplotypeScore=0.0000;MQ=0.00;MQ0=30 GT:A:C:G:T:IR ./.:0,0:0,0:14,16:0,0:0